Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802473.3a.4b.4a.1a with 1 members (Flavin reductase like domain-containing protein)

Eukaryota / Opisthokonta / Fungi / Dikarya / Basidiomycota / Agaricomycotina / Agaricomycetes / Agaricomycetidae / Coniophorineae

Completeness score: 0.50

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This HOG has 62 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0990881.67e	27	120	flavin reductase domain protein FMN-binding
2	HOG:E0990881.67e.87b	19	19	flavin reductase domain protein FMN-binding
3	HOG:E0990881.68l	11	262	flavin reductase domain protein FMN-binding
4	HOG:E0802473.3a.5d	9	132	Flavin reductase like domain-containing protein
5	HOG:E0802473.3a.5d.9a.8a	8	30	Flavin reductase like domain-containing protein
6	HOG:E0990881.68l.132b	5	5	flavin reductase domain protein FMN-binding
7	HOG:E0990881.66d	5	31	flavin reductase domain protein FMN-binding
8	HOG:E0802473.3a.4b.4a	5	8	Flavin reductase like domain-containing protein
9	HOG:E0802473.3a.5d.7d	4	9	Flavin reductase like domain-containing protein
10	HOG:E0802473.3a.4b.4e.6b	4	13	Flavin reductase like domain-containing protein
11	HOG:E0990881.68l.132c	3	19	flavin reductase domain protein FMN-binding
12	HOG:E0990881.63b	3	3	flavin reductase domain protein FMN-binding
13	HOG:E0990881.59e	3	6	flavin reductase domain protein FMN-binding
14	HOG:E0990881.56b	3	5	flavin reductase domain protein FMN-binding
15	HOG:E0802473.3a.5d.9a	3	40	Flavin reductase like domain-containing protein
16	HOG:E0802473.3a.5b	3	38	Flavin reductase like domain-containing protein
17	HOG:E0990881.68l.139a	2	2	flavin reductase domain protein FMN-binding
18	HOG:E0990881.49c	2	2	flavin reductase domain protein FMN-binding
19	HOG:E0802473.3c.8b	2	2	Flavin reductase like domain-containing protein
20	HOG:E0802473.3a.5d.10c.9b	2	4	Flavin reductase like domain-containing protein
21	HOG:E0802473.3a.5d.10c	2	42	Flavin reductase like domain-containing protein
22	HOG:E0802473.3a.4b.4e.4b	2	2	Flavin reductase like domain-containing protein
23	HOG:E0802473.3a.4b	2	64	Flavin reductase like domain-containing protein
24	HOG:E0990881.68l.131b	1	1	flavin reductase domain protein FMN-binding
25	HOG:E0990881.68j.116c	1	1	flavin reductase domain protein FMN-binding

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